matrix eqtl matlab Search Results


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MathWorks Inc matrix eqtl (matlab)
Estimated performance of various <t> eQTL </t> software on the CF dataset
Matrix Eqtl (Matlab), supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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MathWorks Inc matrix eqtl
Estimated performance of various <t> eQTL </t> software on the CF dataset
Matrix Eqtl, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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MathWorks Inc em_mt.m function in the matlab package ht-eqtl
Estimated performance of various <t> eQTL </t> software on the CF dataset
Em Mt.M Function In The Matlab Package Ht Eqtl, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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MathWorks Inc generic nonlinear least square optimizer lsqnonlin
Estimated performance of various <t> eQTL </t> software on the CF dataset
Generic Nonlinear Least Square Optimizer Lsqnonlin, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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MathWorks Inc z-statistics matrix
Estimated performance of various <t> eQTL </t> software on the CF dataset
Z Statistics Matrix, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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MathWorks Inc em_mt.m function
Estimated performance of various <t> eQTL </t> software on the CF dataset
Em Mt.M Function, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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MathWorks Inc maposterior2_1.m function
Estimated performance of various <t> eQTL </t> software on the CF dataset
Maposterior2 1.M Function, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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MathWorks Inc blas time
Speed of various software multiplying 4096 × 4096 matrices
Blas Time, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Estimated performance of various  eQTL  software on the CF dataset

Journal: Bioinformatics

Article Title: Matrix eQTL: ultra fast eQTL analysis via large matrix operations

doi: 10.1093/bioinformatics/bts163

Figure Lengend Snippet: Estimated performance of various eQTL software on the CF dataset

Article Snippet: This did not allow us to make precise estimates of its performance, so we applied Matrix eQTL to the whole dataset and reported the performance in . table ft1 table-wrap mode="anchored" t5 Table 1. caption a7 Method\No. of covariates Zero Ten Plink 9.4 583.3 days Merlin 19.6 20.0 days R/qtl (Revolution R) 1.0 4.7 days snpMatrix 3.2 5.1 days eMap 17.8 N/A days FastMap 10.3 N/A hours Matrix eQTL (Matlab) 11.8 11.8 minutes Matrix eQTL (Revolution R) 14.6 14.6 minutes Matrix eQTL (R, Goto BLAS) 19.4 19.4 minutes Open in a separate window The time for all methods is projected from tests on a dataset with 2201 genes and 57 333 SNPs.

Techniques: Software

Estimated performance of various  eQTL  software on the CF dataset

Journal: Bioinformatics

Article Title: Matrix eQTL: ultra fast eQTL analysis via large matrix operations

doi: 10.1093/bioinformatics/bts163

Figure Lengend Snippet: Estimated performance of various eQTL software on the CF dataset

Article Snippet: Dividing the best theoretically possible time by the time observed in practice, we get the lower bound on the efficiency of Matrix eQTL implementations: 63% for R and 78% for Matlab.

Techniques: Software

Speed of various software multiplying 4096 × 4096 matrices

Journal: Bioinformatics

Article Title: Matrix eQTL: ultra fast eQTL analysis via large matrix operations

doi: 10.1093/bioinformatics/bts163

Figure Lengend Snippet: Speed of various software multiplying 4096 × 4096 matrices

Article Snippet: The test code is available at Matrix eQTL website. table ft1 table-wrap mode="anchored" t5 Table 2. caption a7 Package BLAS Time (s) Comment R x32 2.14.1 Build-in 98.1 R x64 2.14.1 Build-in 77.0 R x32 2.14.1 Atlas C2D 16.5 R x64 2.14.1 Goto 5.5 Revolution R 4.3 Intel KML 3.8 Matlab R2010b Intel KML 3.8 Matlab R2010b Intel KML 1.8 Single precision Matlab R2010b GPU CUDA 0.8 GTX 480, double Matlab R2010b GPU CUDA 0.2 GTX 480, single Open in a separate window Speed of various software multiplying 4096 × 4096 matrices The standard installation of R for Windows (R Development Core Team, 2010) includes a generic BLAS, not optimized for any particular central processing unit (CPU).

Techniques: Software